Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL41228.1Conserved hypothetical protein. (85 aa)    
Predicted Functional Partners:
glmS-2
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
     0.881
EFL41229.1
Conserved hypothetical protein.
       0.779
EFL41231.1
Acetyltransferase.
       0.658
EFL37230.1
Aminoglycoside phosphotransferase.
  
     0.619
EFL40403.1
Membrane protein.
  
     0.614
EFL37702.1
Secreted amidase; Truncated CDS.
  
     0.608
EFL41109.1
beta-N-acetylhexosaminidase.
       0.552
EFL40524.1
Aminoglycoside phosphotransferase.
  
     0.519
EFL43532.1
Transposase.
  
     0.507
EFL41240.1
hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase).
       0.501
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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