Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41247.1Regulatory protein. (538 aa)    
Predicted Functional Partners:
EFL41248.1
Agmatinase; Belongs to the arginase family.
 
     0.823
EFL41246.1
Conserved hypothetical protein.
       0.763
EFL41249.1
Acetolactate synthase, large subunit.
 
     0.656
EFL38922.1
Transcriptional regulator.
  
     0.496
EFL39393.1
Secreted protein.
  
     0.480
EFL38236.1
Regulatory protein.
  
     0.473
EFL41178.1
SEC-C domain-containing protein.
  
     0.465
EFL42223.1
Amino acid permease.
  
     0.458
EFL39844.1
Secreted protein.
  
     0.453
EFL43037.1
Hydrolase.
  
     0.451
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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