Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41252.1Conserved hypothetical protein. (425 aa)    
Predicted Functional Partners:
EFL43027.1
Integral membrane protein.
  
    0.859
EFL41207.1
Conserved hypothetical protein.
  
    0.821
EFL39903.1
Transposase.
 
    0.820
EFL37278.1
IS4 family transposase; Truncated CDS.
  
    0.793
EFL37316.1
IS4 family transposase.
  
    0.793
EFL43121.1
Hypothetical cytosolic protein.
   
    0.620
EFL42840.1
IolB.
   
    0.610
EFL37931.1
Type I restriction system adenine methylase.
  
    0.565
EFL39743.1
Hypothetical protein.
  
    0.565
EFL41542.1
Adenylosuccinate lyase.
  
    0.565
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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