Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41265.1Sugar phosphate isomerase/epimerase. (277 aa)    
Predicted Functional Partners:
EFL41263.1
gfo/Idh/MocA family oxidoreductase.
 
 
  0.978
EFL41264.1
Conserved hypothetical protein.
 
     0.971
EFL41262.1
LacI-family transcriptional regulator.
  
    0.741
EFL42035.1
Oxidoreductase family, NAD-binding Rossmann fold domain-containing protein.
 
 
  0.736
EFL41261.1
AP endonuclease, family 2; Truncated CDS.
 
     0.695
EFL40863.1
PTS system, fructose-specific family, IIABC component.
  
 
  0.691
EFL42757.1
Conserved hypothetical protein.
 
    0.686
EFL41800.1
Anthranilate synthase, phenazine specific.
 
  
  0.628
EFL38172.1
Anthranilate synthase, phenazine specific.
 
  
  0.624
EFL38514.1
Anthranilate synthase, phenazine specific; Unextendable partial coding region.
 
  
  0.618
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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