Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41273.1Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
EFL38274.1
Regulatory protein.
 
   0.804
EFL37501.1
Regulatory protein.
  
   0.786
EFL39443.1
Serine phosphatase.
 
   0.772
EFL38438.1
Regulatory protein.
  
   0.736
EFL42768.1
Conserved hypothetical protein.
  
     0.729
EFL37580.1
Conserved hypothetical protein.
  
     0.728
EFL40140.1
Regulatory protein.
  
     0.727
EFL40730.1
Conserved hypothetical protein.
  
     0.727
EFL41940.1
Conserved hypothetical protein.
 
 
 0.711
EFL38997.1
Conserved hypothetical protein.
  
     0.688
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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