Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
EFL41318.1Protozoan/cyanobacterial globin family protein. (134 aa)    
Predicted Functional Partners:
EFL41319.1
O-methyltransferase.
       0.784
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
  0.735
EFL42054.1
FrnE protein.
 
  
 0.669
EFL41349.1
DSBA oxidoreductase.
  
  
 0.627
EFL42695.1
Hypothetical protein.
    
  0.605
EFL37442.1
PAS/PAC sensor hybrid histidine kinase.
    
  0.584
EFL37443.1
PAS/PAC sensor hybrid histidine kinase.
    
  0.584
EFL41315.1
ABC transporter ATP-binding protein.
       0.552
EFL41316.1
Membrane protein.
       0.552
EFL41317.1
Membrane protein.
       0.552
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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