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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41372.1Rod shape-determining protein MreD. (222 aa)    
Predicted Functional Partners:
EFL41371.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.999
EFL41373.1
Penicillin-binding protein 2.
 
  
 0.974
EFL41374.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
  
 0.954
EFL41370.1
Cell shape-determining protein MreB.
 
  
 0.929
EFL38756.1
Membrane protein.
 
  
 0.805
EFL41368.1
Membrane protein.
 
     0.800
EFL40976.1
Conserved hypothetical protein.
  
     0.732
EFL41375.1
Adenylate cyclase.
       0.730
EFL41863.1
ABC-2 type transporter.
  
     0.718
EFL41376.1
Fe-S oxidoreductase.
       0.716
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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