Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EFL41372.1Rod shape-determining protein MreD. (222 aa)    
Predicted Functional Partners:
EFL41371.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.997
EFL41373.1
Penicillin-binding protein 2.
 
  
 0.956
EFL41370.1
Cell shape-determining protein MreB.
 
  
 0.938
EFL41374.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
  
 0.918
EFL41368.1
Membrane protein.
 
     0.790
EFL38756.1
Membrane protein.
 
  
 0.782
EFL40976.1
Conserved hypothetical protein.
  
     0.732
EFL41863.1
ABC-2 type transporter.
  
     0.718
EFL41375.1
Adenylate cyclase.
       0.715
EFL39949.1
Conserved hypothetical protein.
  
     0.702
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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