STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41443.1M4 (thermolysin) family peptidase; Extracellular zinc metalloprotease. (356 aa)    
Predicted Functional Partners:
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
       0.725
EFL41445.1
Conserved hypothetical protein.
       0.661
EFL38413.1
Cellulose binding protein.
   
  
 0.611
EFL41442.1
Hypothetical protein.
       0.572
EFL42861.1
Protease.
   
  
 0.485
EFL41441.1
Beta-galactosidase.
       0.444
EFL37470.1
Cellulose binding protein.
   
  
 0.427
EFL40239.1
Secreted cellulose-binding protein.
   
  
 0.427
EFL41192.1
GlcNAc-binding protein A.
   
  
 0.427
EFL42177.1
Chitin-binding protein; Unextendable partial coding region.
   
  
 0.427
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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