STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41468.1tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (390 aa)    
Predicted Functional Partners:
EFL37860.1
stearoyl-CoA 9-desaturase.
  
    0.805
EFL41467.1
Drug resistance transporter, EmrB/QacA family protein; Belongs to the major facilitator superfamily.
  
    0.779
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
     
 0.640
EFL37540.1
Condensation domain-containing protein.
     
 0.640
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.585
EFL37338.1
Mycothiol-dependent formaldehyde dehydrogenase.
    
   0.566
EFL41470.1
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
     
 0.566
EFL42205.1
Alcohol dehydrogenase (zinc-binding).
    
   0.566
EFL43062.1
Mycothiol-dependent formaldehyde dehydrogenase.
    
   0.566
EFL43254.1
Alcohol dehydrogenase; Truncated CDS; unextendable partial coding region.
    
   0.566
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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