STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41596.1Cell wall hydrolase/autolysin. (316 aa)    
Predicted Functional Partners:
EFL39792.1
Membrane protein.
    
   0.939
EFL42799.1
PE-PGRS family protein.
  
 0.910
EFL38377.1
S54 (rhomboid) family peptidase.
  
   0.850
EFL40362.1
Rhomboid family protein.
  
   0.850
EFL41778.1
Integral membrane protein.
  
   0.850
EFL41898.1
Rhomboid family protein.
  
   0.850
EFL40588.1
Secreted transglycosylase.
 
 
 0.767
EFL41595.1
Integral membrane protein.
       0.756
EFL41597.1
Secreted protein.
       0.739
EFL39633.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.717
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.