Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL41662.1Ubiquinone biosynthesis protein AarF. (646 aa)    
Predicted Functional Partners:
EFL38465.1
anthraniloyl-CoA monooxygenase.
   
 0.666
EFL41661.1
Membrane efflux protein.
       0.628
EFL41789.1
Cyclase/dehydrase.
    
 
 0.623
EFL41925.1
Methyltransferase domain-containing protein.
  
 
 
 0.582
EFL37328.1
Methyltransferase.
    
 
 0.528
EFL37460.1
Methyltransferase.
    
 
 0.528
EFL38476.1
Methyltransferase type 12.
    
 
 0.528
EFL38477.1
Conserved hypothetical protein.
    
 
 0.528
EFL38560.1
Methyltransferase.
    
 
 0.528
EFL39542.1
Conserved hypothetical protein.
    
 
 0.528
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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