STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41717.1Secreted protein. (535 aa)    
Predicted Functional Partners:
EFL42703.1
Secreted protein.
 
     0.804
EFL41099.1
Membrane protein.
 
     0.700
EFL42935.1
Membrane protein.
 
     0.698
EFL41079.1
Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.619
EFL41515.1
Aminotransferase; Unextendable partial coding region.
  
     0.614
EFL43068.1
Secreted protease.
  
  
 0.604
EFL41409.1
Integral membrane protein.
 
     0.594
EFL41718.1
Two-component system response regulator.
       0.573
EFL41719.1
Two-component system sensor kinase.
       0.573
EFL37705.1
Conserved hypothetical protein.
  
     0.572
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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