Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL41721.1Regulatory protein. (191 aa)    
Predicted Functional Partners:
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
 0.978
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
 0.978
EFL42695.1
Hypothetical protein.
  
 0.948
EFL37442.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.862
EFL37443.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.862
EFL39907.1
Sensor histidine kinase KdpD.
 
 0.826
EFL40492.1
Sensor histidine kinase SenX3.
 
 0.815
EFL41720.1
Reductase.
       0.787
EFL41722.1
Conserved hypothetical protein.
       0.781
EFL40779.1
Conserved hypothetical protein.
   
 0.776
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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