STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41732.1Integral membrane protein. (234 aa)    
Predicted Functional Partners:
EFL41754.1
Integral membrane protein.
 
     0.790
EFL41733.1
Conserved hypothetical protein.
       0.785
rbpA-2
Membrane-associated GTPase; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.768
EFL42531.1
MerR family transcriptional regulator.
  
     0.768
EFL38654.1
Conserved hypothetical protein.
  
     0.766
EFL38387.1
Conserved hypothetical protein.
  
     0.744
EFL37203.1
Single-strand binding protein.
  
     0.741
EFL42425.1
ATPase involved in DNA repair.
  
     0.738
EFL39239.1
Conserved hypothetical protein.
  
     0.734
EFL38662.1
DNA-binding protein.
  
   
 0.733
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.