Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41738.1Conserved hypothetical protein. (302 aa)    
Predicted Functional Partners:
EFL41741.1
Conserved hypothetical protein.
  
    0.794
EFL38132.1
Helix-loop-helix' dimerization domain signature protein.
      0.713
EFL40781.1
Iron-dependent repressor IdeR.
   
    0.643
EFL42197.1
Secreted protein.
  
    0.597
EFL42072.1
Membrane protein; Truncated CDS.
  
    0.592
EFL37707.1
Transcriptional regulator.
   
    0.588
EFL41169.1
TetR family transcriptional regulator.
   
    0.588
EFL43252.1
TetR family transcriptional regulator.
   
    0.588
EFL41737.1
Oxidoreductase.
  
    0.581
EFL40664.1
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.573
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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