STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41776.1Aminotransferase, class V protein. (444 aa)    
Predicted Functional Partners:
EFL42007.1
NifU family SUF system FeS assembly protein.
 
 0.996
EFL42005.1
FeS assembly ATPase SufC.
 
  
 0.953
EFL42002.1
FeS assembly protein SufB.
 
 
 0.927
EFL42003.1
FeS assembly protein SufD.
 
 
 0.923
EFL37479.1
Secreted protein.
    
   0.783
EFL41693.1
Membrane protein.
    
   0.783
EFL41793.1
Endonuclease/exonuclease/phosphatase.
    
   0.783
EFL42836.1
Membrane protein.
    
   0.783
EFL43313.1
Endonuclease/exonuclease/phosphatase.
    
   0.783
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
       0.726
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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