STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41784.1Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
EFL41783.1
Conserved hypothetical protein.
      0.721
EFL39170.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
   
   0.647
EFL37455.1
Carboxylate-amine ligase.
     
  0.634
EFL40981.1
Cystathionine beta-synthase.
     
  0.575
EFL41782.1
Secreted protein.
  
    0.494
EFL40282.1
Extracellular small neutral protease; Belongs to the peptidase M7 family.
  
 
 0.453
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
   0.433
EFL41789.1
Cyclase/dehydrase.
 
     0.431
EFL41966.1
Conserved hypothetical protein.
  
     0.422
EFL41507.1
Virulence factor Mce family protein; Overlaps another CDS with the same product name.
  
     0.419
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.