Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41822.1Conserved hypothetical protein. (120 aa)    
Predicted Functional Partners:
EFL41820.1
ABC-2 type transporter.
       0.765
EFL41821.1
Conserved hypothetical protein.
       0.765
EFL41819.1
TetR-family transcriptional regulator.
       0.750
EFL41823.1
Membrane protein.
       0.552
EFL41030.1
Conserved hypothetical protein.
  
     0.544
EFL39478.1
Sigma factor.
  
     0.471
EFL37856.1
Regulatory protein.
  
     0.463
EFL42395.1
Sporulation and cell division protein SsgA.
  
     0.418
EFL40423.1
Conserved hypothetical protein.
  
     0.412
EFL42268.1
Conserved hypothetical protein.
  
     0.410
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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