Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41868.1Conserved hypothetical protein. (358 aa)    
Predicted Functional Partners:
EFL41867.1
Endopeptidase.
 
     0.887
EFL41869.1
Conserved hypothetical protein.
 
     0.849
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.781
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
 0.779
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
 0.754
EFL40779.1
Conserved hypothetical protein.
  
  
  0.746
EFL39783.1
Conserved hypothetical protein.
  
     0.743
EFL41979.1
Conserved hypothetical protein.
  
     0.729
EFL40923.1
Membrane protein.
 
     0.728
EFL39469.1
Regulatory protein.
 
 
 0.724
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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