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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41927.1uracil-DNA glycosylase, family 4. (238 aa)    
Predicted Functional Partners:
EFL41928.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
       0.822
EFL41926.1
S4 domain-containing protein.
       0.787
EFL37202.1
PE-PGRS family protein.
   
   0.771
EFL37203.1
Single-strand binding protein.
   
   0.771
EFL40405.1
Single-strand binding protein.
   
   0.771
EFL41304.1
Single-stranded DNA-binding protein 2.
   
   0.771
EFL39656.1
Peptidase M22, glycoprotease.
  
    0.691
EFL41424.1
2-nitropropane dioxygenase.
    
  0.681
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.613
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.524
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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