Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL41936.1Integral membrane protein. (351 aa)    
Predicted Functional Partners:
EFL39469.1
Regulatory protein.
  
     0.737
EFL41935.1
Nucleotidyltransferase domain-containing protein.
       0.734
EFL42007.1
NifU family SUF system FeS assembly protein.
   
    0.730
EFL40125.1
Conserved hypothetical protein.
  
     0.688
EFL40473.1
Conserved hypothetical protein.
  
     0.685
EFL37649.1
Membrane protein.
  
     0.683
EFL41979.1
Conserved hypothetical protein.
  
     0.677
EFL39520.1
Conserved hypothetical protein.
  
     0.642
EFL41347.1
Conserved hypothetical protein.
  
     0.635
EFL39783.1
Conserved hypothetical protein.
  
     0.632
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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