STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL41981.1ABC transporter, ATP-binding protein. (263 aa)    
Predicted Functional Partners:
EFL41980.1
Integral membrane.
 
  0.980
EFL38592.1
Conserved hypothetical protein.
 0.935
EFL41982.1
PadR family transcriptional regulator.
 
     0.887
EFL40951.1
ABC lipoprotein transporter, permease component.
 
  0.878
EFL39488.1
Integral membrane protein.
 
 0.857
EFL42613.1
ABC transporter integral membrane protein.
  
  0.853
EFL38796.1
ABC transporter, permease.
  
 0.823
EFL39792.1
Membrane protein.
   
 
 0.792
EFL38635.1
Ferric citrate transport system ATP-binding protein.
 
  
  0.774
EFL41316.1
Membrane protein.
  
 0.768
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.