STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42000.1ABC-type efflux protein, ATP-binding protein. (307 aa)    
Predicted Functional Partners:
EFL41999.1
ABC-type efflux system, permease.
 
 
  0.956
EFL42001.1
DNA-binding protein.
       0.769
EFL42002.1
FeS assembly protein SufB.
       0.769
EFL41998.1
Integral membrane transporter.
     
 0.749
EFL42007.1
NifU family SUF system FeS assembly protein.
       0.717
EFL42008.1
Aromatic ring hydroxylating enzyme.
       0.717
EFL42009.1
Multidrug transporter EmrE.
       0.675
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.646
EFL40189.1
ABC transporter membrane-spanning protein.
  
 
 0.617
EFL40190.1
ABC transporter membrane-spanning protein; Truncated CDS.
  
 
 0.617
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.