Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42024.1Conserved hypothetical protein. (457 aa)    
Predicted Functional Partners:
EFL42023.1
Sugar ABC transporter permease.
 
  0.999
EFL42022.1
Sugar ABC transporter permease.
 
 0.997
EFL40676.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.965
EFL42203.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.965
EFL42825.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.952
EFL42021.1
Zinc-binding dehydrogenase.
 
     0.838
EFL37940.1
Transmembrane sugar transporter; Overlaps another CDS with the same product name.
  
 0.800
EFL37939.1
Transmembrane sugar transporter; Overlaps another CDS with the same product name.
  
 0.794
EFL38485.1
Sugar transporter integral membrane protein; Overlaps another CDS with the same product name.
  
 0.794
EFL42824.1
Sugar ABC transporter, permease.
  
 0.794
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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