Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL42027.15-dehydro-4-deoxyglucarate dehydratase 1 (5-keto-4-deoxy-glucarate dehydratase 1) (KDGDH 1); Belongs to the DapA family. (314 aa)    
Predicted Functional Partners:
EFL43425.1
Mandelate racemase/muconate lactonizing enzyme family protein.
 
  
 0.944
EFL41433.1
Mandelate racemase/muconate lactonizing enzyme family protein.
 
  
 0.942
EFL42049.1
Fatty aldehyde dehydrogenase.
 
 
  0.829
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.791
EFL42026.1
NAD dependent epimerase/dehydratase.
 
     0.779
EFL42904.1
Mandelate racemase/muconate lactonizing enzyme family protein.
    
 0.759
EFL39537.1
Transferase.
     
 0.669
EFL38171.1
Aspartate kinase; Belongs to the aspartokinase family.
 
 
 0.668
EFL40169.1
Aspartate kinase, monofunctional class; Belongs to the aspartokinase family.
 
 
 0.636
EFL39098.1
Homoserine dehydrogenase.
 
  
 0.605
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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