STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42029.1Conserved hypothetical protein. (197 aa)    
Predicted Functional Partners:
EFL42028.1
Integral membrane efflux protein.
       0.773
EFL42035.1
Oxidoreductase family, NAD-binding Rossmann fold domain-containing protein.
 
     0.618
EFL42033.1
Integral membrane transporter; Overlaps another CDS with the same product name.
  
    0.592
EFL37589.1
Antar domain-containing protein.
  
     0.557
EFL42030.1
Transcriptional regulator.
       0.552
EFL42031.1
Dihydrodipicolinate synthase; Belongs to the DapA family.
       0.552
EFL42032.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.552
EFL42034.1
Integral membrane transporter; Overlaps another CDS with the same product name.
       0.552
EFL42036.1
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
       0.527
EFL40497.1
ANTAR domain-containing protein.
  
     0.516
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.