STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42036.1Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family. (509 aa)    
Predicted Functional Partners:
EFL42038.1
Conserved hypothetical protein.
 
     0.929
EFL42040.1
Secreted pectinesterase.
 
     0.906
EFL42917.1
Endo-1,4-beta-xylanase Z.
 
  
 0.880
EFL42039.1
Pectate lyase (PL); Unextendable partial coding region.
 
   
 0.796
EFL42037.1
Secreted sugar-binding protein.
       0.787
EFL40607.1
Pectinesterase/pectate lyase protein.
 
   
 0.779
EFL38260.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
  
     0.772
EFL38252.1
Glycosyl hydrolase, family 2; Unextendable partial coding region.
 
  
  0.768
EFL37773.1
Galactosidase.
  
  
 0.758
EFL38800.1
Conserved hypothetical protein.
 
  
  0.756
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.