STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42040.1Secreted pectinesterase. (370 aa)    
Predicted Functional Partners:
EFL42039.1
Pectate lyase (PL); Unextendable partial coding region.
  
 0.992
EFL42043.1
Secreted lyase.
  
  
 0.960
EFL42712.1
Secreted lyase.
  
  
 0.960
EFL41699.1
Ribosomal protein L18.
 
  
 0.959
EFL42038.1
Conserved hypothetical protein.
  
 0.947
EFL40607.1
Pectinesterase/pectate lyase protein.
 
  
0.919
EFL42036.1
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.906
EFL42041.1
Hypothetical protein.
       0.870
EFL38260.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
  
 0.865
EFL42037.1
Secreted sugar-binding protein.
 
     0.745
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.