Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL42043.1Secreted lyase. (276 aa)    
Predicted Functional Partners:
EFL42039.1
Pectate lyase (PL); Unextendable partial coding region.
  
  
 0.959
EFL40607.1
Pectinesterase/pectate lyase protein.
  
  
 0.953
EFL42040.1
Secreted pectinesterase.
  
  
 0.943
EFL41699.1
Ribosomal protein L18.
  
  
 0.928
EFL42712.1
Secreted lyase.
     
  0.850
EFL42751.1
Cellulose-binding, family II, bacterial type.
  
  0.798
EFL37469.1
Endo-1,4-beta-glucanase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
  0.797
EFL42044.1
Conserved hypothetical protein.
       0.780
EFL42873.1
Endo-1,4-beta-xylanase B; Truncated CDS; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.767
EFL38799.1
Secreted sugar hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
  0.740
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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