Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42046.1Penicillin-binding protein. (485 aa)    
Predicted Functional Partners:
EFL39152.1
Cell division protein FtsW; Belongs to the SEDS family.
 0.981
EFL40353.1
Cell division protein FtsW; Belongs to the SEDS family.
 0.970
EFL41374.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 0.922
EFL41830.1
Penicillin-binding protein 3.
  
  
0.826
EFL39378.1
Bifunctional penicillin-binding protein 1a/1b pona1.
  
 
0.823
EFL41157.1
Penicillin-binding protein 1.
  
 
0.823
EFL40399.1
Penicillin-binding protein.
  
 
0.821
EFL40075.1
Penicillin-binding protein.
  
 
0.814
EFL40305.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
 
 0.811
EFL42799.1
PE-PGRS family protein.
  
 
 0.811
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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