STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42048.1IclR-family transcriptional regulator. (257 aa)    
Predicted Functional Partners:
EFL42047.1
GNAT family acetyltransferase.
       0.878
EFL42049.1
Fatty aldehyde dehydrogenase.
    
  0.774
EFL40422.1
IclR-family transcriptional regulator.
  
     0.744
EFL41121.1
Differentiation regulon.
  
     0.640
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
     
  0.633
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
     
  0.633
EFL42046.1
Penicillin-binding protein.
       0.620
EFL42053.1
Conserved hypothetical protein.
       0.552
EFL42054.1
FrnE protein.
       0.552
EFL42055.1
Class V superfamily aminotransferase.
       0.552
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.