Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42085.1Transcriptional regulator. (88 aa)    
Predicted Functional Partners:
EFL42084.1
ABC transporter, ATP-binding protein.
  
    0.783
EFL42086.1
enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.766
EFL42395.1
Sporulation and cell division protein SsgA.
  
   
 0.728
EFL40423.1
Conserved hypothetical protein.
  
   
 0.708
EFL37197.1
Sporulation and cell division protein SsgA.
  
   
 0.692
EFL42446.1
Helix-turn-helix domain-containing protein.
  
     0.688
EFL42083.1
Glyoxalase.
       0.673
EFL37856.1
Regulatory protein.
  
   
 0.625
EFL40618.1
Conserved hypothetical protein.
  
     0.526
EFL39197.1
Anti-sigma factor (match).
  
     0.520
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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