STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42091.1Glycoside hydrolase, family 15. (593 aa)    
Predicted Functional Partners:
EFL40694.1
Trehalose-phosphate synthase.
 
  
 0.869
EFL42092.1
RNA polymerase ECF-subfamily sigma factor; Truncated CDS; unextendable partial coding region; Belongs to the sigma-70 factor family. ECF subfamily.
       0.700
EFL38322.1
Malto-oligosyltrehalose trehalohydrolase.
 
 
 0.684
EFL42093.1
Solute:sodium symporter (SSS) family transporter.
 
     0.669
EFL41711.1
Alpha-amylase.
    
 0.648
EFL38317.1
Malto-oligosyltrehalose synthase.
 
  
 0.565
EFL37930.1
Secreted protein.
     
  0.530
EFL39371.1
Syringomycin synthetase.
     
  0.504
EFL43484.1
Polyketide synthase.
    
  0.480
EFL37633.1
Trehalose synthase.
    
 0.478
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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