STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42093.1Solute:sodium symporter (SSS) family transporter. (522 aa)    
Predicted Functional Partners:
EFL42092.1
RNA polymerase ECF-subfamily sigma factor; Truncated CDS; unextendable partial coding region; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.812
EFL39205.1
Integral membrane protein.
 
   
 0.808
EFL42091.1
Glycoside hydrolase, family 15.
 
     0.669
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
 0.641
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.623
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
 0.577
EFL37879.1
Phospholipase C, phosphocholine-specific; Unextendable partial coding region.
  
     0.556
EFL38921.1
Proline dehydrogenase.
  
  
 0.528
EFL42695.1
Hypothetical protein.
  
 
 0.516
EFL37442.1
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.510
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.