STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42221.1NTP pyrophosphohydrolase. (177 aa)    
Predicted Functional Partners:
EFL42220.1
Membrane protein.
       0.862
EFL38187.1
Diphosphomevalonate decarboxylase.
  
 
 0.817
EFL42222.1
Conserved hypothetical protein.
       0.733
EFL42223.1
Amino acid permease.
       0.696
EFL42225.1
Formate dehydrogenase.
 
     0.694
EFL38183.1
hydroxymethylglutaryl-CoA synthase.
  
  
 0.652
EFL43496.1
Polyketide TA biosynthesis protein TaC.
  
  
 0.652
EFL42224.1
Reductase.
       0.650
EFL37827.1
Squalene synthase HpnD.
  
 
 0.605
EFL37828.1
Squalene synthase HpnC.
  
 
 0.605
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.