STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42228.1GntR family transcription regulator. (233 aa)    
Predicted Functional Partners:
EFL42227.1
Shikimate kinase.
 
   
 0.900
EFL37748.1
GntR-family regulatory protein.
  
  
 0.696
EFL42226.1
Gluconate permease.
 
   
 0.679
EFL41744.1
Regulatory protein GntR, HTH.
  
  
 0.649
EFL37406.1
GntR family transcriptional regulator.
  
  
 0.614
EFL38062.1
GntR family transcriptional regulator.
  
     0.608
EFL42508.1
GntR family transcriptional regulator.
  
  
 0.598
EFL38678.1
Transcriptional regulator.
  
  
 0.592
EFL43389.1
GntR-family transcriptional regulator.
  
     0.584
EFL40181.1
GntR-family transcriptional regulator.
  
  
 0.576
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.