Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL42228.1GntR family transcription regulator. (233 aa)    
Predicted Functional Partners:
EFL42227.1
Shikimate kinase.
 
   
 0.858
EFL42226.1
Gluconate permease.
 
   
 0.700
EFL41744.1
Regulatory protein GntR, HTH.
  
  
 0.645
EFL37406.1
GntR family transcriptional regulator.
  
  
 0.610
EFL38062.1
GntR family transcriptional regulator.
  
     0.608
EFL38678.1
Transcriptional regulator.
  
  
 0.587
EFL43389.1
GntR-family transcriptional regulator.
  
     0.584
EFL40181.1
GntR-family transcriptional regulator.
  
  
 0.571
EFL37768.1
L-asparagine operon repressor (GntR family).
  
     0.565
EFL38164.1
Isochorismatase.
    
   0.559
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.