STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL42232.1Conserved hypothetical protein. (237 aa)    
Predicted Functional Partners:
EFL42231.1
Conserved hypothetical protein.
       0.789
EFL41403.1
Membrane protein.
  
     0.763
EFL40327.1
Membrane protein; Overlaps another CDS with the same product name.
  
     0.761
EFL42502.1
Membrane protein.
  
     0.757
EFL40584.1
Membrane protein.
  
     0.749
EFL40585.1
Integral membrane protein.
  
     0.745
EFL40333.1
Conserved hypothetical protein.
  
     0.742
EFL40210.1
Conserved hypothetical protein.
  
     0.729
EFL40879.1
Membrane protein.
  
     0.726
EFL40801.1
TetR-family transcriptional regulator.
  
     0.704
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.