Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL42252.1RecB family exonuclease. (277 aa)    
Predicted Functional Partners:
EFL42251.1
Two-component system response regulator.
       0.866
EFL42412.1
Phosphatidylinositol alpha-mannosyltransferase.
  
     0.653
EFL42413.1
Membrane protein.
  
     0.650
EFL42411.1
1-acylglycerol-3-phosphate O-acyltransferase.
  
     0.609
whiB-5
Conserved hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.584
EFL42253.1
M50 family peptidase; Belongs to the peptidase M50B family.
       0.552
EFL42254.1
tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.552
EFL42255.1
Secreted protein.
       0.552
EFL39251.1
ATP-dependent DNA helicase (UvrD/REP).
   
  0.549
EFL39255.1
UvrD/Rep family helicase.
   
  0.549
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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