STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60806.1Metallo-beta-lactamase domain protein; KEGG: tva:TVAG_437970 2.5e-29 RNA-metabolising metallo-beta-lactamase family protein; K14403 cleavage and polyadenylation specificity factor subunit 3; Psort location: Cytoplasmic, score: 8.96. (382 aa)    
Predicted Functional Partners:
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.993
KXB60671.1
Hypothetical protein.
    
 0.978
KXB60171.1
WD domain, G-beta repeat protein; KEGG: hhy:Halhy_6674 1.2e-09 (myosin heavy-chain) kinase; Psort location: OuterMembrane, score: 9.49.
    
 0.978
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.931
KXB53554.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.929
KXB60808.1
DnaK family protein; KEGG: tex:Teth514_1029 3.3e-40 2-alkenal reductase; Psort location: Cytoplasmic, score: 9.97.
 
    0.911
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.884
KXB60807.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.751
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.688
KXB60809.1
Hypothetical protein; KEGG: rci:RCIX108 2.4e-14 ampS; putative leucyl aminopeptidase; Psort location: Cytoplasmic, score: 8.96.
       0.685
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.