STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60835.1Iron dependent repressor, DNA binding domain protein; KEGG: pfe:PSF113_0030 4.1e-11 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00. (589 aa)    
Predicted Functional Partners:
KXB60832.1
ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 3.2e-12 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the bacterial solute-binding protein 9 family.
 
 0.988
KXB60834.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 7.0e-18 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
0.967
KXB60833.1
Putative manganese transport system ATP-binding protein MntA; KEGG: lan:Lacal_1142 1.4e-65 phosphonate-transporting ATPase K11710; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.959
KXB60780.1
ABC transporter, ATP-binding protein; KEGG: csh:Closa_0143 3.2e-61 ABC transporter; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.949
KXB60779.1
ABC transporter, substrate-binding protein; KEGG: sah:SaurJH1_2478 4.3e-26 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.893
KXB60781.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 2.0e-20 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
  0.607
KXB55526.1
Iron dependent repressor, DNA binding domain protein; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.552
KXB59131.1
ABC transporter, permease protein; KEGG: rcm:A1E_00665 8.9e-34 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.410
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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