STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60859.1KEGG: csh:Closa_3890 7.6e-60 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the peptidase S26 family. (179 aa)    
Predicted Functional Partners:
KXB56892.1
Signal peptidase I; KEGG: sni:INV104_08700 1.3e-23 Signal peptidase I; K03100 signal peptidase I; Psort location: Cytoplasmic, score: 8.96; Belongs to the peptidase S26 family.
 
  
0.841
KXB53938.1
KEGG: csh:Closa_2104 1.3e-32 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family.
 
 
 
0.834
secF
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.661
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
 
 
 0.630
KXB57966.1
RIP metalloprotease RseP; KEGG: rho:RHOM_07190 2.5e-84 putative membrane-associated Zn-dependent protease; K11749 regulator of sigma E protease; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.604
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.570
KXB58696.1
Acetyltransferase, GNAT family; KEGG: sax:USA300HOU_2661 7.3e-23 acetyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
 
    0.501
KXB54025.1
Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.466
KXB60861.1
Transporter, small conductance mechanosensitive ion channel MscS family protein; KEGG: mla:Mlab_1701 1.7e-23 phosphoglycerate mutase K01834; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.445
KXB59527.1
KEGG: cbn:CbC4_0564 2.8e-62 rpoN; RNA polymerase sigma-54 factor K03092; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.436
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.