STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60468.1ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.6e-10 maltose/maltodextrin ABC transporter ATP-binding protein K10108; Psort location: CytoplasmicMembrane, score: 9.82. (365 aa)    
Predicted Functional Partners:
KXB60471.1
ABC transporter, permease protein; KEGG: apb:SAR116_1511 6.0e-28 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.
  0.964
KXB60470.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
 
  0.963
KXB60472.1
ABC transporter, permease protein; KEGG: pmo:Pmob_0956 3.7e-44 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.953
KXB60469.1
Hypothetical protein.
      0.926
KXB54806.1
ABC transporter, permease protein; KEGG: tex:Teth514_2199 9.1e-48 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.756
KXB61159.1
KEGG: apb:SAR116_1198 1.2e-31 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00.
  0.753
KXB54805.1
Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 5.7e-39 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.
  0.749
KXB57163.1
KEGG: apb:SAR116_1198 2.4e-24 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00.
  0.741
KXB58058.1
ABC transporter, permease protein; KEGG: smt:Smal_2681 2.4e-40 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.733
KXB59775.1
ABC transporter, permease protein; KEGG: ppy:PPE_00791 2.7e-25 L-arabinose transporter permease araP K10189; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.730
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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