STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60500.1VanW-like protein; KEGG: nvi:100117336 0.0069 NV15231; uncharacterized LOC100117336; K09880 enolase-phosphatase E1; Psort location: OuterMembrane, score: 9.49. (565 aa)    
Predicted Functional Partners:
KXB60501.1
Hypothetical protein; KEGG: bpb:bpr_I2839 1.1e-17 thiL; thiamine-monophosphate kinase ThiL; Psort location: Cytoplasmic, score: 8.96.
 
     0.862
KXB60504.1
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.791
KXB60502.1
Transcriptional regulator, AsnC family; KEGG: cnc:CNE_1c32850 8.1e-08 dapB2; dihydrodipicolinate reductase DapB.
       0.790
KXB60503.1
Putative aspartate transaminase; KEGG: bpb:bpr_I2837 6.2e-152 aspartate/tyrosine/aromatic aminotransferase; K10907 aminotransferase; Psort location: Cytoplasmic, score: 9.97.
       0.780
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.550
KXB60491.1
six-Cys-in-45 modification radical SAM protein; KEGG: mcj:MCON_2732 3.9e-16 anaerobic sulfatase-maturating protein K06871; Psort location: Cytoplasmic, score: 8.96.
 
     0.543
KXB60499.1
KEGG: csh:Closa_0349 1.5e-47 DNA polymerase III subunit epsilon K03763; Psort location: Cytoplasmic, score: 9.97.
       0.524
KXB60495.1
Exonuclease; KEGG: ppo:PPM_1485 1.5e-10 exoN1; exonuclease domain-containing protein 1; Psort location: Cytoplasmic, score: 8.96.
       0.512
KXB60496.1
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.512
KXB60497.1
Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: csh:Closa_0346 1.9e-72 dCMP deaminase K01493.
       0.512
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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