STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60342.1KEGG: taz:TREAZ_0238 4.3e-121 putative M18 family aminopeptidase 1; Psort location: Cytoplasmic, score: 9.97. (464 aa)    
Predicted Functional Partners:
KXB60341.1
S1 RNA binding domain protein; KEGG: mta:Moth_1329 5.8e-32 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K02945:K03527; Psort location: Cytoplasmic, score: 9.97.
       0.752
KXB60343.1
Trigger factor; KEGG: ssd:SPSINT_1433 3.0e-49 cell division trigger factor K03545.
       0.723
KXB60344.1
HAD hydrolase, family IIB; KEGG: bya:BANAU_1365 1.8e-19 ykrA; HMP-PP phosphatase K07024; Psort location: Cytoplasmic, score: 8.96.
       0.723
KXB60347.1
KEGG: csh:Closa_0386 1.5e-40 pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase; Psort location: Cytoplasmic, score: 9.97.
       0.666
KXB60345.1
KEGG: csh:Closa_0381 3.4e-73 serine O-acetyltransferase; K00640 serine O-acetyltransferase; Psort location: Cytoplasmic, score: 9.97.
       0.660
KXB60346.1
GIY-YIG catalytic domain protein; KEGG: apb:SAR116_2460 3.2e-13 Excinuclease ABC subunit C domain-containing protein K07461; Psort location: Cytoplasmic, score: 8.96.
       0.660
KXB60348.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.479
KXB56844.1
Magnesium transporter; Acts as a magnesium transporter.
      
 0.477
KXB60340.1
Rubrerythrin; KEGG: cpr:CPR_0938 4.3e-50 periplasmic [Fe] hydrogenase 1 K00532; Psort location: Cytoplasmic, score: 8.96.
       0.439
KXB60349.1
Flavodoxin; KEGG: tpl:TPCCA_0925 4.2e-27 nitrogenase (flavodoxin).
       0.418
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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