STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60343.1Trigger factor; KEGG: ssd:SPSINT_1433 3.0e-49 cell division trigger factor K03545. (415 aa)    
Predicted Functional Partners:
KXB57647.1
Ribosomal protein S7; KEGG: apb:SAR116_2387 4.7e-44 30S ribosomal protein S7 K02992; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.967
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.953
rpmC
Ribosomal protein L29; KEGG: apb:SAR116_2399 5.0e-08 50S ribosomal protein L29 K02904; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uL29 family.
 
 
 0.940
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 4.5e-30 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.928
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
 
 0.925
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 9.9e-19 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 8.96.
 
   0.922
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
 0.922
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
 
 
 0.922
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.922
rpsB
Ribosomal protein S2; KEGG: apb:SAR116_0519 7.9e-65 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.922
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.