STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60031.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bpb:bpr_I2924 8.2e-63 dacA3; D-alanyl-D-alanine carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S11 family. (492 aa)    
Predicted Functional Partners:
KXB52846.1
Transglycosylase; KEGG: csh:Closa_1568 0. peptidoglycan glycosyltransferase K05366; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.785
KXB56359.1
Peptidoglycan binding domain protein; KEGG: bha:BH3665 3.4e-31 lytC; N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.776
KXB60030.1
Hypothetical protein; KEGG: mcu:HMPREF0573_11599 6.0e-06 pphA; Ser/Thr and Tyr protein phosphatase (dual specificity); Psort location: CytoplasmicMembrane, score: 10.00.
       0.568
KXB60367.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: csh:Closa_2464 2.2e-181 peptidoglycan glycosyltransferase K08384; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.555
KXB60032.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: ipo:Ilyop_1890 1.8e-07 dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase; Psort location: Cytoplasmic, score: 8.96.
       0.537
KXB54911.1
FtsK/SpoIIIE family protein; KEGG: eab:ECABU_c09310 7.8e-122 ftsK; cell division protein FtsK K03466; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.442
KXB60343.1
Trigger factor; KEGG: ssd:SPSINT_1433 3.0e-49 cell division trigger factor K03545.
  
    0.433
KXB59983.1
Hypothetical protein; KEGG: scp:HMPREF0833_10244 1.2e-11 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97.
  
     0.403
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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