STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB60046.1TIGR00659 family protein; KEGG: bqy:MUS_0199 1.5e-31 yxaC; holin-like protein; Psort location: CytoplasmicMembrane, score: 10.00. (230 aa)    
Predicted Functional Partners:
KXB60047.1
LrgA family protein; KEGG: btk:BT9727_5121 2.5e-13 murein hydrolase regulator LrgA K05338; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.995
KXB60048.1
Hypothetical protein; KEGG: bqy:MUS_1036 1.4e-17 yhaN; myosin-heavy-chain kinase; Psort location: Cytoplasmic, score: 8.96.
 
     0.806
KXB60049.1
Ser/Thr phosphatase family protein; KEGG: bsr:I33_1120 4.5e-22 YhaO; Psort location: Cytoplasmic, score: 8.96.
 
    0.800
asnS
asparagine--tRNA ligase; KEGG: csh:Closa_0119 1.8e-202 asparaginyl-tRNA synthetase; K01893 asparaginyl-tRNA synthetase; Psort location: Cytoplasmic, score: 10.00.
       0.709
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.