STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB59317.1Cell wall-binding repeat protein; KEGG: sjj:SPJ_1844 1.0e-25 autolysin (N-acetylmuramoyl-L-alanine amidase) (Mureinhydrolase) (Mucopeptide aminohydrolase) (Cell wall hydrolase); Psort location: Extracellular, score: 9.65. (305 aa)    
Predicted Functional Partners:
KXB59535.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 6.9e-21 cell wall hydrolase/autolysin K01448; Psort location: OuterMembrane, score: 9.52.
  
     0.767
KXB56684.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 1.4e-11 cell wall hydrolase/autolysin K01448.
  
     0.765
KXB58070.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 8.4e-13 cell wall hydrolase/autolysin K01448.
  
     0.758
KXB58127.1
Choline/ethanolamine kinase; KEGG: tpl:TPCCA_0107 1.3e-133 putative bifunctional choline-phosphate cytidylyltransferase/choline kinase; Psort location: Cytoplasmic, score: 8.96.
  
     0.727
KXB55565.1
LICD family protein; KEGG: csh:Closa_0497 1.6e-68 LicD family protein; K07271 lipopolysaccharide cholinephosphotransferase.
  
     0.579
KXB55570.1
Hypothetical protein; KEGG: stu:STH8232_1700 3.1e-16 brp/Blh family beta-carotene 15,15-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.431
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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