STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (217 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.835
KXB54903.1
Putative ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.687
KXB60428.1
serine--tRNA ligase; KEGG: rho:RHOM_11685 6.4e-198 seryl-tRNA synthetase; K01875 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 10.00.
   
 
 0.665
KXB55587.1
NOL1/NOP2/sun family protein; KEGG: bbe:BBR47_43550 4.0e-86 ribosomal RNA small subunit methyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.636
rpmD
Ribosomal protein L30; KEGG: apb:SAR116_2409 5.7e-07 50S ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.26.
   
    0.630
KXB57348.1
KEGG: ere:EUBREC_2926 5.0e-111 N-acetylglucosamine-6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase; Psort location: Cytoplasmic, score: 9.97.
      0.620
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.581
KXB58134.1
Rhodanese-like protein; KEGG: fbl:Fbal_1913 2.4e-31 tRNA s(2)C-32 sulfurtransferase K14058; Psort location: Cytoplasmic, score: 9.97; Belongs to the TtcA family.
   
  
 0.580
KXB59218.1
PDZ/DHR/GLGF domain protein; KEGG: cpy:Cphy_3543 3.8e-97 2-alkenal reductase.
  
    0.549
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.543
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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