STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB59051.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
KXB55515.1
Hsp90 protein; KEGG: dme:Dmel_CG1242 1.0e-62 Hsp83; Heat shock protein 83 K04079; Psort location: Cytoplasmic, score: 9.97.
   
 0.819
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.793
KXB59159.1
Glycosyltransferase, group 2 family protein; KEGG: bpb:bpr_I0559 5.1e-70 glycosyl transferase 2; K12992 rhamnosyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.774
KXB53541.1
Ankyrin repeat protein; KEGG: phu:Phum_PHUM288780 0.00029 ankyrin repeat-containing protein, putative; Psort location: Cytoplasmic, score: 8.96.
   
 0.772
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.755
KXB59050.1
KEGG: ain:Acin_2364 1.5e-134 aldehyde dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
  0.754
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.699
KXB61235.1
Cyclic nucleotide-binding domain protein; KEGG: clo:HMPREF0868_0893 3.8e-11 pflA; pyruvate formate-lyase 1-activating enzyme K04069; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.698
KXB60671.1
Hypothetical protein.
   
 0.651
KXB60171.1
WD domain, G-beta repeat protein; KEGG: hhy:Halhy_6674 1.2e-09 (myosin heavy-chain) kinase; Psort location: OuterMembrane, score: 9.49.
   
 0.651
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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